Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LIHC rs75669960 chr6:169939060 A/G 1.76E-5 365 19.83 18.8 4.27 KM Plot
LIHC rs75908454 chr6:169970623 T/C 8.9E-6 361 19.83 18.8 4.27 KM Plot
LIHC rs75915538 chr2:37094804 C/T 1.66E-5 368 20.45 12.17 8.73 KM Plot
LIHC rs75969025 chr2:37104019 T/C 9.47E-6 366 20.45 12.17 8.73 KM Plot
LIHC rs76014874 chr5:147043891 G/A 4.13E-7 366 20.05 16.2 4.67 KM Plot
LIHC rs76102681 chr14:73436898 A/G 4.0E-6 367 20.38 13.03 8.73 KM Plot
LIHC rs76143197 chr6:169933830 T/G 8.59E-6 364 19.8 19.13 4.27 KM Plot
LIHC rs76193270 chr14:73682226 G/A 1.76E-6 365 20.5 12.07 4.93 KM Plot
LIHC rs76380228 chr2:37144316 T/C 1.04E-5 367 20.5 12.17 8.73 KM Plot
LIHC rs76400280 chr2:37091479 C/A 1.19E-5 368 20.5 12.17 8.73 KM Plot
LIHC rs76418616 chr2:158949724 C/T 5.47E-6 361 21.03 13.6 9.07 KM Plot
LIHC rs76426658 chr14:73648813 G/A 2.05E-6 365 20.6 13.17 4.93 KM Plot
LIHC rs76446994 chr14:73456422 C/T 5.2E-6 367 20.5 13.17 8.73 KM Plot
LIHC rs76479105 chr2:37103107 AT/A 1.23E-5 366 20.45 12.17 8.73 KM Plot
LIHC rs76479803 chr14:73468828 T/C 1.84E-6 367 20.38 13.17 4.93 KM Plot